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add course 2

master
Antoine Neuraz 5 anni fa
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courses/bar-chart-race.Rmd Vedi File

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---
title: "Make a bar chart race of the biggest cities in France"
output: rmarkdown::html_vignette
vignette: >
%\VignetteIndexEntry{bar-chart-race}
%\VignetteEngine{knitr::rmarkdown}
%\VignetteEncoding{UTF-8}
---

```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
```

```{r setup}
library(vizoR)
library(dplyr, warn.conflicts = FALSE)
library(ggplot2)
library(hrbrthemes)
library(gganimate)
```


Load data
```{r load_data}
# load data
data("base_pop")

# create the ranks based on census populations
base_pop<- base_pop %>%
group_by( annee) %>%
arrange(desc(population)) %>%
mutate(rang = 1:n()) %>%
ungroup()

```


Extract the list of top n cities
```{r extract_top_n}
n_cities = 10

top_cities <- base_pop %>% filter(rang <= n_cities) %>%
select(ville, dep, region) %>% distinct()

```


Create all missing dates
```{r, combine_dates}
# create a data frame with all the years between min and max Year
all_years <- data.frame(annee = seq(min(base_pop$annee), max(base_pop$annee), 1))

# combine top_cities and all_years
all_combos <- merge(top_cities, all_years, all = T)

# combine all_combos with the original dataset
res_interp <- merge(base_pop, all_combos, all.y = T)
```

Interpolate the populations when missing (linear interpolation here)
```{r, interpolate}
res_interp <- res_interp %>%
group_by(ville) %>%
mutate(population=approx(annee,population,annee)$y)
```


```{r, filter_for_plot}
# filter the top ten cities per year
to_plot <- res_interp %>%
group_by(annee) %>%
arrange(-population) %>%
mutate(rang=row_number()) %>%
filter(rang<=n_cities) %>%
rename(`Région` = region)

```


Make the plot
```{r, make_plot}
p <- to_plot %>%

ggplot(aes(x = -rang,y = population, group =ville)) +
geom_tile(aes(y = population / 2, height = population, fill = `Région`), width = 0.9) +
geom_text(aes(label = ville), hjust = "right", colour = "white", fontface="bold", nudge_y = -10000) +
geom_text(aes(label = scales::comma(population,big.mark = ' ')), hjust = "left", nudge_y = 10000, colour = "grey90") +
coord_flip(clip="off") +
hrbrthemes::scale_fill_ipsum() +
scale_x_discrete("") +
scale_y_continuous("",labels=scales::comma_format(big.mark = " ")) +
theme_elegant_dark(base_size = 20) +
theme(
panel.grid.minor.x=element_blank(),
axis.line = element_blank(),
panel.grid.major= element_line(color='lightgrey', size=.2),
legend.position = c(0.6, 0.2),
plot.margin = margin(1,1,1,2,"cm"),
plot.title = element_text(hjust = 0),
axis.text.y=element_blank(),
legend.text = element_text(size = 15),
legend.background = element_blank()) +
# gganimate code to transition by year:
transition_time(annee) +
ease_aes('cubic-in-out') +
labs(title='Evolution des plus grandes villes de France',
subtitle='Population en {round(frame_time,0)}',
caption='Source: INSEE Base populations historiques 1876-2015')

```

```{r, animate}
animate(p, nframes = 350, fps = 25, end_pause = 30, width = 1200, height = 1200, start_pause = 15 )

```



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courses/data/minard/cities.txt Vedi File

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long lat city
24.0 55.0 Kowno
25.3 54.7 Wilna
26.4 54.4 Smorgoni
26.8 54.3 Moiodexno
27.7 55.2 Gloubokoe
27.6 53.9 Minsk
28.5 54.3 Studienska
28.7 55.5 Polotzk
29.2 54.4 Bobr
30.2 55.3 Witebsk
30.4 54.5 Orscha
30.4 53.9 Mohilow
32.0 54.8 Smolensk
33.2 54.9 Dorogobouge
34.3 55.2 Wixma
34.4 55.5 Chjat
36.0 55.5 Mojaisk
37.6 55.8 Moscou
36.6 55.3 Tarantino
36.5 55.0 Malo-Jarosewii

+ 10
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courses/data/minard/temps.txt Vedi File

@@ -0,0 +1,10 @@
long temp month day date
37.6 0 Oct 18 18OCT1812
36.0 0 Oct 24 24OCT1812
33.2 -9 Nov 9 09NOV1812
32.0 -21 Nov 14 14NOV1812
29.2 -11 Nov 24 24NOV1812
28.5 -20 Nov 28 28NOV1812
27.2 -24 Dec 1 01DEC1812
26.7 -30 Dec 6 06DEC1812
25.3 -26 Dec 7 07DEC1812

+ 52
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courses/data/minard/troops.txt Vedi File

@@ -0,0 +1,52 @@
long lat survivors direction group
24.0 54.9 340000 A 1
24.5 55.0 340000 A 1
25.5 54.5 340000 A 1
26.0 54.7 320000 A 1
27.0 54.8 300000 A 1
28.0 54.9 280000 A 1
28.5 55.0 240000 A 1
29.0 55.1 210000 A 1
30.0 55.2 180000 A 1
30.3 55.3 175000 A 1
32.0 54.8 145000 A 1
33.2 54.9 140000 A 1
34.4 55.5 127100 A 1
35.5 55.4 100000 A 1
36.0 55.5 100000 A 1
37.6 55.8 100000 A 1
37.7 55.7 100000 R 1
37.5 55.7 98000 R 1
37.0 55.0 97000 R 1
36.8 55.0 96000 R 1
35.4 55.3 87000 R 1
34.3 55.2 55000 R 1
33.3 54.8 37000 R 1
32.0 54.6 24000 R 1
30.4 54.4 20000 R 1
29.2 54.3 20000 R 1
28.5 54.2 20000 R 1
28.3 54.3 20000 R 1
27.5 54.5 20000 R 1
26.8 54.3 12000 R 1
26.4 54.4 14000 R 1
25.0 54.4 8000 R 1
24.4 54.4 4000 R 1
24.2 54.4 4000 R 1
24.1 54.4 4000 R 1
24.0 55.1 60000 A 2
24.5 55.2 60000 A 2
25.5 54.7 60000 A 2
26.6 55.7 40000 A 2
27.4 55.6 33000 A 2
28.7 55.5 33000 A 2
28.7 55.5 33000 R 2
29.2 54.2 30000 R 2
28.5 54.1 30000 R 2
28.3 54.2 28000 R 2
24.0 55.2 22000 A 3
24.5 55.3 22000 A 3
24.6 55.8 6000 A 3
24.6 55.8 6000 R 3
24.2 54.4 6000 R 3
24.1 54.4 6000 R 3

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courses/lab02-perception-colors.Rmd Vedi File

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---
title: "LAB 2: Perception et couleurs"
author: "Antoine Neuraz"
date: "19/11/2019"
output:
xaringan::moon_reader:
css: ['default','css/my_style.css']
lib_dir: libs
seal: false
nature:
ratio: '4:3'
countIncrementalSlides: false
self-contained: true
beforeInit: "addons/macros.js"
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
library(ggplot2)
library(showtext)
```

---
## Les couleurs dans ggplot2

```{r}
dsamp <- diamonds[sample(nrow(diamonds), 1000), ]
ggplot(dsamp, aes(carat, price)) +
geom_point(aes(colour = clarity)) +
scale_color_brewer(palette = "Set3")
```

```{r}

ggplot(dsamp, aes(carat, price)) +
geom_point(aes(colour = carat))) +
scale_color_distiller(palette="RdYlBu")
```

```{r}

font_add_google("Gochi Hand", "gochi")
showtext_auto()
annotate_color = "grey50"
font_add_google("Schoolbell", "bell")

midpoint = (max(dsamp$carat)-min(dsamp$carat))/2

ggplot(dsamp, aes(carat, price)) +
geom_vline(xintercept = midpoint, color = annotate_color) +
geom_point(aes(colour = carat)) +
scale_color_gradient2(low = "#d8b365",
mid="#f5f5f5",
high="#5ab4ac",
midpoint = midpoint) +
annotate("text",
x=.78, y=15000, hjust=1, srt=40,
label ="this is the midpoint",
family="bell",
color=annotate_color) +
annotate("curve",
x = .8, xend=midpoint-.01, y=15000, yend = 14000,
curvature = -.5,
color=annotate_color ,
arrow=arrow(length = unit(0.03, "npc") )) +
theme_minimal() +
theme(panel.grid.minor = element_blank(),
panel.grid.major.x = element_blank()) + ggthemes::theme_tufte()

```




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courses/line-charts.Rmd Vedi File

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---
title: "Line charts for population data"
output: rmarkdown::html_vignette
vignette: >
%\VignetteIndexEntry{bar-chart-race}
%\VignetteEngine{knitr::rmarkdown}
%\VignetteEncoding{UTF-8}
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
library(vizoR)
library(ggplot2)
library(gghighlight)
library(dplyr)
```


```{r}

data("us_city_populations")

n_cities = 5

top_cities <- us_city_populations %>% filter(Rank <= n_cities) %>%
select(City, State, Region) %>% distinct()

to_plot <- filter(us_city_populations, City %in% top_cities$City)
to_plot <- us_city_populations

last_ranks <- to_plot %>% filter(Year == max(Year)) %>%
mutate(last_rank = Rank) %>% select(City, last_rank)

to_plot <- left_join(to_plot, last_ranks, by= 'City')

right_axis <- to_plot %>%
group_by(City) %>%
top_n(1, Year) %>%
ungroup() %>%
top_n(n_cities, -last_rank)

ends <- right_axis %>%
pull(Population)

labels <- right_axis %>%
pull(City)

```

```{r}
ggplot(to_plot, aes(x=Year, y = Population, group = City, color = Region)) +
geom_line(size=1) +
#geom_text(data = subset(to_plot, Year == 2010), aes(x=Inf, y = Population, label=City), hjust = 1) +
scale_x_continuous("", expand=c(0,0))+
scale_y_continuous("",
labels=scales::comma_format(big.mark = " "),
sec.axis = sec_axis(~ ., breaks = ends, labels = labels ))+
theme_elegant() +
theme(legend.position = "bottom",
plot.margin = unit(c(1,3,1,1), "lines"),
axis.line.y = element_blank(),
axis.line.x = element_blank(),
axis.ticks.x = element_line(),
panel.grid.major.y = element_line(color= 'grey90', size = .2) ) +
gghighlight(max(last_rank) <= n_cities, use_direct_label = FALSE, label_key = City)
```

```{r}

data("base_pop")

n_cities = 10

# create the ranks based on census populations
base_pop<- base_pop %>%
group_by( annee) %>%
arrange(desc(population)) %>%
mutate(rang = 1:n()) %>%
ungroup()

top_cities <- base_pop %>% filter(rang <= n_cities) %>%
select(ville, dep , region) %>% distinct()

to_plot <- filter(base_pop, ville %in% top_cities$ville)
#to_plot <- base_pop

last_ranks <- to_plot %>% filter(annee == max(annee)) %>%
mutate(last_rank = rang) %>% select(ville, last_rank)

to_plot <- left_join(to_plot, last_ranks, by= 'ville')

right_axis <- to_plot %>%
group_by(ville) %>%
top_n(1, annee) %>%
ungroup() %>%
top_n(n_cities, -last_rank)

ends <- right_axis %>%
pull(population)

labels <- right_axis %>%
pull(ville)

```

```{r}
ggplot(to_plot, aes(x=annee, y = population, group = ville, color = region)) +
geom_line(size=1) +
#geom_text(data = subset(to_plot, Year == 2010), aes(x=Inf, y = Population, label=City), hjust = 1) +
scale_x_continuous("", expand=c(0,0))+
scale_y_continuous("",
labels=scales::comma_format(big.mark = " "),
sec.axis = sec_axis(~ ., breaks = ends, labels = labels ))+
theme_elegant() +
theme(legend.position = "bottom",
plot.margin = unit(c(1,3,1,1), "lines"),
axis.line.y = element_blank(),
axis.line.x = element_blank(),
axis.ticks.x = element_line(),
panel.grid.major.y = element_line(color= 'grey90', size = .2) ) +
gghighlight(max(last_rank) <= n_cities, use_direct_label = FALSE, label_key = ville)
```

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courses/minard.Rmd Vedi File

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---
title: "Minard"
author: "Antoine Neuraz"
date: "18/11/2019"
output: html_document
---

```{r, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

```{r}
library(tidyverse)
library(lubridate)
library(ggmap)
library(ggrepel)
library(gridExtra)
library(pander)
library(ggmap)

# https://www.andrewheiss.com/blog/2017/08/10/exploring-minards-1812-plot-with-ggplot2/

cities <- read.table("data/minard/cities.txt",
header = TRUE, stringsAsFactors = FALSE)

troops <- read.table("data/minard/troops.txt",
header = TRUE, stringsAsFactors = FALSE)

temps <- read.table("data/minard/temps.txt",
header = TRUE, stringsAsFactors = FALSE) %>%
mutate(date = dmy(date)) # Convert string to actual date

temps.nice <- temps %>%
mutate(nice.label = paste0(temp, "°, ", month, ". ", day))

```

```{r, fig.asp=.4}

font_family = "Helvetica"
color_cities = "black" #"#DC5B44"

color_troops_fw = "#DFC17E"
color_troops_bw = "#252523"
# No map this time
march.1812.plot.simple <- ggplot() +
geom_path(data = troops, aes(x = long, y = lat, group = group,
color = direction, size = survivors),
lineend = "round") +
geom_point(data = cities, aes(x = long, y = lat),
color = color_cities) +
geom_text_repel(data = cities, aes(x = long, y = lat, label = city),
color = color_cities, family = font_family) +
scale_size(range = c(0.5, 15)) +
scale_colour_manual(values = c(color_troops_fw,color_troops_bw )) +
guides(color = FALSE, size = FALSE) +
theme_nothing()

# Change the x-axis limits to match the simple map
temps.1812.plot <- ggplot(data = temps.nice, aes(x = long, y = temp)) +
geom_line() +
geom_text_repel(aes(label = nice.label),
family = font_family, size = 2.5) +
labs(x = NULL, y = "° Celsius") +
scale_x_continuous(limits = ggplot_build(march.1812.plot.simple)$layout$panel_ranges[[1]]$x.range) +
scale_y_continuous(position = "right") +
coord_cartesian(ylim = c(-35, 5)) + # Add some space above/below
theme_bw(base_family = font_family) +
theme(panel.grid.major.x = element_blank(),
panel.grid.minor.x = element_blank(),
panel.grid.minor.y = element_blank(),
axis.text.x = element_blank(), axis.ticks = element_blank(),
panel.border = element_blank())

# Combine the two plots
both.1812.plot.simple <- rbind(ggplotGrob(march.1812.plot.simple),
ggplotGrob(temps.1812.plot))

# Adjust panels
panels <- both.1812.plot.simple$layout$t[grep("panel", both.1812.plot.simple$layout$name)]

# Because this plot doesn't use coord_equal, since it's not a map, we can use whatever relative numbers we want, like a 3:1 ratio
both.1812.plot.simple$heights[panels] <- unit(c(3, 1), "null")

grid::grid.newpage()
grid::grid.draw(both.1812.plot.simple)
```

```{r}
march.1812.europe <- c(left = -13.10, bottom = 35.75, right = 41.04, top = 61.86)

march.1812.europe.map.wc <- get_stamenmap(bbox = march.1812.europe, zoom = 5,
maptype = "toner", where = "cache")

ggmap(march.1812.europe.map.wc) +
geom_path(data = troops, aes(x = long, y = lat, group = group,
color = direction, size = survivors),
lineend = "round") +
scale_size(range = c(0.5, 5)) +
scale_colour_manual(values = c("#DFC17E", "#252523")) +
guides(color = FALSE, size = FALSE) +
theme_nothing() # This is a special theme that comes with ggmap
```



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