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dataviz/courses/04-interactivite.html

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  1. <!DOCTYPE html>

  2. <html lang="" xml:lang="">

  3.   <head>

  4.     <title>Interactivité</title>

  5.     <meta charset="utf-8" />

  6.     <meta name="author" content="Maxime Wack" />

  7.     <script src="libs/header-attrs-2.1/header-attrs.js"></script>

  8.     <link href="libs/remark-css-0.0.1/default.css" rel="stylesheet" />

  9.     <script src="libs/htmlwidgets-1.5.1/htmlwidgets.js"></script>

  10.     <script src="libs/plotly-binding-4.9.2.1/plotly.js"></script>

  11.     <script src="libs/typedarray-0.1/typedarray.min.js"></script>

  12.     <script src="libs/jquery-1.11.3/jquery.min.js"></script>

  13.     <link href="libs/crosstalk-1.1.0.1/css/crosstalk.css" rel="stylesheet" />

  14.     <script src="libs/crosstalk-1.1.0.1/js/crosstalk.min.js"></script>

  15.     <link href="libs/plotly-htmlwidgets-css-1.52.2/plotly-htmlwidgets.css" rel="stylesheet" />

  16.     <script src="libs/plotly-main-1.52.2/plotly-latest.min.js"></script>

  17.     <link rel="stylesheet" href="css/my_style.css" type="text/css" />

  18.   </head>

  19.   <body>

  20.     <textarea id="source">

  21. 

  22. 

  23. 

  24. 

  25. class: center, middle, title

  26. 

  27. # UE Visualisation

  28. 

  29. ### 2020-2021

  30. 

  31. ## Dr. Maxime Wack

  32. 

  33. ### AHU Informatique médicale

  34. #### Hôpital Européen Georges Pompidou, &lt;/br&gt; Université de Paris

  35. 

  36. ---

  37. class: center, middle

  38. 

  39. # Objectif

  40. 

  41. ## Ajouter de l'**interactivité** à une visualisation

  42. 

  43. ---

  44. 

  45. # Interactivité

  46. 

  47. ## Réactivité

  48. 

  49. L'objet **réagit** à l'utilisateur, mais n'est pas modifié

  50. 

  51. ## Interactivité

  52. 

  53. L'utilisateur peut **influer** sur l'objet &lt;/br&gt;

  54. Un objet peut en **modifier** un autre

  55. 

  56. ---

  57. class: center

  58. 

  59. # Outils

  60. 

  61. ### ggplot2 + ggplotly

  62. 

  63. ### plotly

  64. 

  65. ### D3

  66. 

  67. ### VegaLite

  68. 

  69. ### Shiny

  70. 

  71. ---

  72. class: center, middle

  73. 

  74. # ggplot2 + ggplotly

  75. 

  76. ---

  77. 

  78. ### Installer `plotly`

  79. 

  80. 

  81. ```r

  82. install.packages("plotly")

  83. ```

  84. 

  85. 

  86. ```r

  87. library(tidyverse)

  88. library(plotly)

  89. ```

  90. 

  91. ---

  92. 

  93. 

  94. ```r

  95. iris %&gt;%

  96.   ggplot() +

  97.   aes(x = Petal.Length, fill = Species) +

  98.   geom_histogram() -&gt; plot

  99. 

  100. ggplotly(plot)

  101. ```

  102. 

  103. <div id="htmlwidget-6c9b7edd0e217b9b2450" style="width:504px;height:504px;" class="plotly html-widget"></div>

  104. <script type="application/json" 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  105. 

  106. ---

  107. 

  108. 

  109. ```r

  110. (iris %&gt;%

  111.   ggplot() +

  112.    aes(x = Petal.Length, y = Petal.Width, color = Species) +

  113.    geom_point()) %&gt;%

  114.   ggplotly

  115. ```

  116. 

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  119. 

  120. ---

  121. 

  122. 

  123. ```r

  124. iris %&gt;%

  125.   ggplot() +

  126.   geom_histogram(data = iris %&gt;% select(-Species), aes(x = Petal.Length)) +

  127.   geom_histogram(aes(x = Petal.Length, fill = Species)) +

  128.   facet_grid(~Species) -&gt; plot

  129. 

  130. ggplotly(plot)

  131. ```

  132. 

  133. <div id="htmlwidget-8f2755a24657659ba01f" style="width:504px;height:504px;" class="plotly html-widget"></div>

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  135. 

  136. ---

  137. class:center, middle

  138. 

  139. # Plotly

  140. 

  141. ---

  142. 

  143. # Plotly

  144. 

  145. ### Utilise aussi une **grammaire de graphiques**

  146. 

  147. ### Bibliothèque **JS**

  148. 

  149. ### Interface par un **package R**

  150. 

  151. ### Couche d'**abstraction** pour ggplot2

  152. 

  153. https://plot.ly/r

  154. 

  155. ---

  156. 

  157. # Plotly

  158. 

  159. ### `ggplot` → `plot_ly()`

  160. 

  161. ### `geom_*` → `add_*` ou `add_trace`

  162. 

  163. Les *aes* sont données avec des formules dans les traces

  164. 

  165. ### `facet_*` → **subplots**

  166. 

  167. ### `scale_*_*` + `theme` → `layout`

  168. 

  169. ### `+` → `%&gt;%`

  170. 

  171. ---

  172. 

  173. 

  174. ```r

  175. iris %&gt;%

  176.   plot_ly() %&gt;%

  177.   add_markers(x = ~Sepal.Length,

  178.               y = ~Sepal.Width)

  179. ```

  180. 

  181. <div id="htmlwidget-00c8d158f7159f089413" style="width:504px;height:504px;" class="plotly html-widget"></div>

  182. <script type="application/json" data-for="htmlwidget-00c8d158f7159f089413">{"x":{"visdat":{"3eda63b076914":["function () ","plotlyVisDat"]},"cur_data":"3eda63b076914","attrs":{"3eda63b076914":{"alpha_stroke":1,"sizes":[10,100],"spans":[1,20],"x":{},"y":{},"type":"scatter","mode":"markers","inherit":true}},"layout":{"margin":{"b":40,"l":60,"t":25,"r":10},"xaxis":{"domain":[0,1],"automargin":true,"title":"Sepal.Length"},"yaxis":{"domain":[0,1],"automargin":true,"title":"Sepal.Width"},"hovermode":"closest","showlegend":false},"source":"A","config":{"showSendToCloud":false},"data":[{"x":[5.1,4.9,4.7,4.6,5,5.4,4.6,5,4.4,4.9,5.4,4.8,4.8,4.3,5.8,5.7,5.4,5.1,5.7,5.1,5.4,5.1,4.6,5.1,4.8,5,5,5.2,5.2,4.7,4.8,5.4,5.2,5.5,4.9,5,5.5,4.9,4.4,5.1,5,4.5,4.4,5,5.1,4.8,5.1,4.6,5.3,5,7,6.4,6.9,5.5,6.5,5.7,6.3,4.9,6.6,5.2,5,5.9,6,6.1,5.6,6.7,5.6,5.8,6.2,5.6,5.9,6.1,6.3,6.1,6.4,6.6,6.8,6.7,6,5.7,5.5,5.5,5.8,6,5.4,6,6.7,6.3,5.6,5.5,5.5,6.1,5.8,5,5.6,5.7,5.7,6.2,5.1,5.7,6.3,5.8,7.1,6.3,6.5,7.6,4.9,7.3,6.7,7.2,6.5,6.4,6.8,5.7,5.8,6.4,6.5,7.7,7.7,6,6.9,5.6,7.7,6.3,6.7,7.2,6.2,6.1,6.4,7.2,7.4,7.9,6.4,6.3,6.1,7.7,6.3,6.4,6,6.9,6.7,6.9,5.8,6.8,6.7,6.7,6.3,6.5,6.2,5.9],"y":[3.5,3,3.2,3.1,3.6,3.9,3.4,3.4,2.9,3.1,3.7,3.4,3,3,4,4.4,3.9,3.5,3.8,3.8,3.4,3.7,3.6,3.3,3.4,3,3.4,3.5,3.4,3.2,3.1,3.4,4.1,4.2,3.1,3.2,3.5,3.6,3,3.4,3.5,2.3,3.2,3.5,3.8,3,3.8,3.2,3.7,3.3,3.2,3.2,3.1,2.3,2.8,2.8,3.3,2.4,2.9,2.7,2,3,2.2,2.9,2.9,3.1,3,2.7,2.2,2.5,3.2,2.8,2.5,2.8,2.9,3,2.8,3,2.9,2.6,2.4,2.4,2.7,2.7,3,3.4,3.1,2.3,3,2.5,2.6,3,2.6,2.3,2.7,3,2.9,2.9,2.5,2.8,3.3,2.7,3,2.9,3,3,2.5,2.9,2.5,3.6,3.2,2.7,3,2.5,2.8,3.2,3,3.8,2.6,2.2,3.2,2.8,2.8,2.7,3.3,3.2,2.8,3,2.8,3,2.8,3.8,2.8,2.8,2.6,3,3.4,3.1,3,3.1,3.1,3.1,2.7,3.2,3.3,3,2.5,3,3.4,3],"type":"scatter","mode":"markers","marker":{"color":"rgba(31,119,180,1)","line":{"color":"rgba(31,119,180,1)"}},"error_y":{"color":"rgba(31,119,180,1)"},"error_x":{"color":"rgba(31,119,180,1)"},"line":{"color":"rgba(31,119,180,1)"},"xaxis":"x","yaxis":"y","frame":null}],"highlight":{"on":"plotly_click","persistent":false,"dynamic":false,"selectize":false,"opacityDim":0.2,"selected":{"opacity":1},"debounce":0},"shinyEvents":["plotly_hover","plotly_click","plotly_selected","plotly_relayout","plotly_brushed","plotly_brushing","plotly_clickannotation","plotly_doubleclick","plotly_deselect","plotly_afterplot","plotly_sunburstclick"],"base_url":"https://plot.ly"},"evals":[],"jsHooks":[]}</script>

  183. 

  184. ---

  185. 

  186. 

  187. ```r

  188. iris %&gt;%

  189.   plot_ly(x = ~Sepal.Length,

  190.           y = ~Sepal.Width) %&gt;%

  191.   add_trace(color = ~Species,

  192.             size = 4,

  193.             mode = "markers")

  194. ```

  195. 

  196. <div id="htmlwidget-9fb12b132935bf07d85a" style="width:504px;height:504px;" class="plotly html-widget"></div>

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  198. 

  199. ---

  200. 

  201. 

  202. ```r

  203. iris %&gt;%

  204.   plot_ly(x = ~Sepal.Length,

  205.           y = ~Sepal.Width,

  206.           color = ~Species) %&gt;%

  207.   add_markers(size = 2,

  208.               hoverinfo = "text",

  209.               text = ~str_c("Espèce : ", Species, "\n",

  210.                             "Longueur de sépale :", Sepal.Length, "\n",

  211.                             "Largeur de sépale :", Sepal.Width))

  212. ```

  213. 

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  216. 

  217. ---

  218. 

  219. # Plotly

  220. 

  221. ### Interaction poussée (JS)

  222. 

  223. ### Animations (frame)

  224. 

  225. *Aesthetic* d'animation, variable définissant l'état à chaque image clé

  226. 

  227. ---

  228. class:center, middle

  229. 

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  232. 

  233. ---

  234. 

  235. # D3

  236. 

  237. .pull-left[

  238. ### **D**ata **D**riven **D**ocuments

  239. ### Créé par **Mike Bostock**

  240. *Data journalist* au NYT

  241. ]

  242. 

  243. .pull-right[

  244. ![:scale 50%](04-img/bostock.jpg)

  245. ]

  246. 

  247. ### Moteur *bas niveau* pour manipuler des éléments du DOM et du SVG à partir de données.

  248. 

  249. ### Notion de grammaire liant données et propriétés CSS, dont **animations** et **transitions**

  250. 

  251. .center[https://d3js.org]

  252. 

  253. ---

  254. class: center

  255. 

  256. # Outils dérivés de D3.js

  257. 

  258. ## Plot.ly

  259. 

  260. ## Vega(lite)

  261. 

  262. ## C3.js

  263. 

  264. ## R2D3 https://rstudio.github.io/r2d3/

  265. 

  266. ---

  267. 

  268. # Réactivité

  269. 

  270. ## Tous les outils précédents sont **réactifs**

  271. 

  272. ### → affichage d'un overlay

  273. 

  274. ### → changement de position/échelle

  275. 

  276. ### → afficher / masquer / réordonner

  277. 

  278. (modulo interactions en *JS* à bricoler soi-même)

  279. 

  280. 

  281. ---

  282. 

  283. # Interactivité

  284. 

  285. ## Manipulation des données

  286. 

  287. ## Interactions avec la visualisation

  288. 

  289. ## Interactions entre éléments de visualisation

  290. 

  291. ---

  292. 

  293. # Shiny

  294. 

  295. ### Architecture client/serveur

  296. 

  297. ### Client = interface web

  298. 

  299. ### Serveur = runtime R

  300. 

  301. https://shiny.rstudio.com/

  302. 

  303. https://mastering-shiny.org/

  304. 

  305. ---

  306. 

  307. # Shiny

  308. 

  309. ## Programmation **événementielle** → programmation **réactive**

  310. 

  311. ## L'interface est mise à jour *quand nécessaire*

  312. 

  313. ---

  314. 

  315. 

  316. # Interface web

  317. 

  318. ### Créée dans R

  319. 

  320. ### Génère HTML + CSS + JS

  321. 

  322. ### Définit des **input** et **output**

  323. 

  324. ---

  325. 

  326. # UI

  327. 

  328. 

  329. ```r

  330. ui &lt;- fluidPage(titlePanel = "Titre",

  331.                 sidebarLayout(

  332.                     sidebarPanel(

  333.                       sliderInput(inputId = "bins",

  334.                                   label = "Bins",

  335.                                   min = 1,

  336.                                   max = 50,

  337.                                   value = 30,

  338.                                   animate = animationOptions(interval = 100))),

  339.                     mainPanel(plotOutput(outputId = "figure"))))

  340. ```

  341. 

  342. ---

  343. 

  344. # Serveur

  345. 

  346. ### Créé et exécuté dans R

  347. 

  348. ### Génère les éléments d'**output** en fonction des **input**

  349. 

  350. ### Les **outputs** peuvent *générer* de l'input (htmlwidgets : DT, plotly, etc.)

  351. 

  352. ### Le serveur peut créer des **input** dynamiques

  353. 

  354. ---

  355. 

  356. # Server

  357. 

  358. 

  359. ```r

  360. server &lt;- function(input, output, session)

  361. {

  362.   set.seed(1234)

  363.   normale &lt;- tibble(val = rnorm(1000))

  364. 

  365.   output$figure &lt;- renderPlot(

  366.   {

  367.     normale %&gt;%

  368.       ggplot() +

  369.       aes(x = val) +

  370.       geom_histogram(bins = input$bins)

  371.   })

  372. }

  373. ```

  374.     </textarea>

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