DIM
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R2b2
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  • 7809de2 (HEAD -> master) Default credentials to locally connect to db by Maxime Wack 2017-09-13 12:29:09 -0400
  • db26a9e Restarted README by Maxime Wack 2017-09-13 12:16:06 -0400
  • e09c8d8 Added an initialization script by Maxime Wack 2017-09-13 11:18:45 -0400
  • 2d43d97 Removed specific code by Maxime Wack 2017-09-13 08:40:48 -0400
  • bb7186a Removed specific files by Maxime Wack 2017-09-13 08:16:50 -0400
  • 644da9f Correct column defaults for populate_ont for structure by Maxime Wack 2017-09-01 07:24:40 -0400
  • ec1efc5 Do not create a schema for a new crc database by Maxime Wack 2017-08-24 13:41:41 -0400
  • 1c7f8d5 Function to create users and managers for projects and top_project by Maxime Wack 2017-08-24 13:29:22 -0400
  • 9bab8c3 Function to load data on projects and a top_project by Maxime Wack 2017-08-24 13:28:37 -0400
  • 803f03b Function to load data in the main project by Maxime Wack 2017-08-24 13:26:48 -0400
  • b736b61 Modifier_cd in read_mensurations by Maxime Wack 2017-08-24 13:26:09 -0400
  • 596c89c Formatting by Maxime Wack 2017-08-24 13:25:48 -0400
  • c3b8a19 Fix read_bios with optional arguments and modifier_cd by Maxime Wack 2017-08-24 13:25:30 -0400
  • 8da32fe vectorize sanitize_* functions by Maxime Wack 2017-08-24 13:24:07 -0400
  • b5b726d Formatting by Maxime Wack 2017-08-24 13:23:45 -0400
  • 9f3102a n() in mutate doesn't need the namespace by Maxime Wack 2017-08-24 13:23:03 -0400
  • 90c42b3 Correct joins and select for dxcare data by Maxime Wack 2017-08-24 13:22:18 -0400
  • 35e3cde Restart pgsql before deleting a project, restart jboss after adding/deleting a project by Maxime Wack 2017-08-24 13:18:13 -0400
  • 0acd2d4 scipen for dbUpsert by Maxime Wack 2017-08-24 13:16:33 -0400
  • 96924ce Cleaning typos and leftovers from cc by Maxime Wack 2017-08-24 08:19:49 -0400
  • ad4995a Delete user roles when deleting a project by Maxime Wack 2017-08-24 08:19:26 -0400
  • 11fc32d Sanitize_patient not encounter by Maxime Wack 2017-08-24 07:59:01 -0400
  • 3395b1d Use database names from the beginning (inout_cd) by Maxime Wack 2017-08-24 07:45:09 -0400
  • 6bfa44a Checks and documentation updates by Maxime Wack 2017-08-24 07:42:31 -0400
  • c772b7c Moved some common patterns to functions by Maxime Wack 2017-08-23 12:47:03 -0400
  • 3962c7a Count the instance_num when pushing observations by Maxime Wack 2017-08-23 12:46:08 -0400
  • 81df0df Fix for crc-ds.xml ? (previous version overwrote the whole file ?) by Maxime Wack 2017-08-23 08:32:25 -0400
  • f745c10 Added a bunch of projects and users and data by Maxime Wack 2017-08-22 13:17:08 -0400
  • 7843bbb Correct for empty dataframes by Maxime Wack 2017-08-22 13:16:47 -0400
  • 2f098d1 Correct for empty dataframes, + correct date format by Maxime Wack 2017-08-22 13:16:24 -0400
  • 297d424 Typo in filename by Maxime Wack 2017-08-21 08:30:17 -0400
  • e18b9d2 Discard null values by Maxime Wack 2017-08-21 08:24:08 -0400
  • 7046f3d Corrected for multiple instances by Maxime Wack 2017-08-18 14:28:50 -0400
  • b0dcdef Added body measurments to onto by Maxime Wack 2017-08-18 14:28:04 -0400
  • 9f78bc3 Populate main hospital db by Maxime Wack 2017-08-18 06:39:13 -0400
  • 1b89348 Don't insert HIVE mappings ? by Maxime Wack 2017-08-18 06:38:44 -0400
  • c95b202 Correct for collisions by Maxime Wack 2017-08-18 06:38:09 -0400
  • c115fac Add AGG_SERVICE_ACCOUNT to a new project by Maxime Wack 2017-08-18 06:35:04 -0400
  • 587fee4 Updated doc by Maxime Wack 2017-08-17 14:11:36 -0400
  • ff1adbf Import data functions by Maxime Wack 2017-08-17 14:11:21 -0400
  • f672631 Current fresh_install by Maxime Wack 2017-08-17 14:10:59 -0400
  • 3faba28 Use a mapping for encounters by Maxime Wack 2017-08-17 14:10:31 -0400
  • bfc12f1 use sex_cd, no need to complicate variable naming by Maxime Wack 2017-08-17 14:09:29 -0400
  • b729dd8 Corrected for duplicate values and incorrect codes + missing mapping by Maxime Wack 2017-08-17 11:14:29 -0400
  • 1537e4c Correctly formatted ontology files by Maxime Wack 2017-08-17 10:41:19 -0400
  • 3eee2a8 Fix in formula call by Maxime Wack 2017-08-17 09:57:55 -0400
  • 9cc9cec Correction for rebuild indexes to do it on the current crc database for the project by Maxime Wack 2017-08-17 09:48:29 -0400
  • 204d312 Namespace and documentation fixes by Maxime Wack 2017-08-17 09:47:54 -0400
  • aac83bb Updated doc by Maxime Wack 2017-08-17 09:29:50 -0400
  • 6aad195 Also get ont name from scheme when inserting concepts/providers, and use new ont format by Maxime Wack 2017-08-17 09:29:25 -0400
  • d320558 Automatically get ontology name from scheme when populating by Maxime Wack 2017-08-17 09:25:34 -0400
  • 2d7a33f Updated doc by Maxime Wack 2017-08-17 08:54:58 -0400
  • f68307a Still allow for a remote domain call for i2b2 xml messages by Maxime Wack 2017-08-17 08:54:33 -0400
  • 9005f69 Set created project (A)ctive by Maxime Wack 2017-08-17 08:51:06 -0400
  • 672b58d Updated documentation by Maxime Wack 2017-08-17 08:39:50 -0400
  • 59a23b3 Get the domain id locally for i2b2_msg by Maxime Wack 2017-08-17 08:39:32 -0400
  • 04f0015 Erase secure_db by Maxime Wack 2017-08-17 08:38:58 -0400
  • 4c6329e database name in lowercase by Maxime Wack 2017-08-17 08:38:08 -0400
  • 3fa4ea6 Deleted ontology.R as functions became less useful by Maxime Wack 2017-08-17 08:37:49 -0400
  • 098b647 Correct formatting for the output crc-ds.xml file by Maxime Wack 2017-08-17 08:02:27 -0400
  • d650ded Corrected xml for crc-ds by Maxime Wack 2017-08-17 07:54:15 -0400
  • 1c9659e Fix in default workspace_access line by Maxime Wack 2017-08-16 10:50:40 -0400
  • 9db4d57 Vacuum tables when clearing them by Maxime Wack 2017-08-16 10:50:21 -0400
  • 5fd68a9 Drop correct database when deleting project by Maxime Wack 2017-08-16 10:49:36 -0400
  • 2aa5f32 Fix in clear_default_demodata by Maxime Wack 2017-08-16 10:49:06 -0400
  • 9423444 Corrected automatic correction for pg -> postgresql-9.1 in system service function by Maxime Wack 2017-08-16 09:22:58 -0400
  • 50db8f1 Updated doc + checks by Maxime Wack 2017-08-16 09:19:46 -0400
  • 3805061 Hide function secure_db as it conflicts with multiple projects by Maxime Wack 2017-08-16 09:19:24 -0400
  • c8009a9 Specify project in demodata functions by Maxime Wack 2017-08-16 09:18:31 -0400
  • 28192b1 Added function to manage services by Maxime Wack 2017-08-16 07:42:07 -0400
  • 9799245 Added modification of crc-ds.xml for new crc databases by Maxime Wack 2017-08-16 06:39:30 -0400
  • a593c4f Hide secure database as it is not useful if postgresql is correctly configured, and will interact with creation of new projects by Maxime Wack 2017-08-16 06:38:51 -0400
  • 53908af Removal of trailing spaces by Maxime Wack 2017-08-16 06:38:13 -0400
  • 086f428 Doc for list_concepts by Maxime Wack 2017-08-14 10:55:46 -0400
  • 88cb073 Added documentation by Maxime Wack 2017-08-14 10:52:24 -0400
  • 8c6cdf6 Added get_domain. Changed set_project with add_project and added delete_project and list_projects by Maxime Wack 2017-08-14 10:51:51 -0400
  • 5be28f4 host/admin/pass args at the end of function calls by Maxime Wack 2017-08-11 11:40:01 -0400
  • 7675fb6 Added workplace scripts by Maxime Wack 2017-08-11 11:39:27 -0400
  • e97a849 Udpated populate_concept with new format for ontology and modifiers by Maxime Wack 2017-08-11 10:32:26 -0400
  • 9f6c3d0 Added documentation for list_concepts by Maxime Wack 2017-08-11 10:04:53 -0400
  • 2516197 Onto bio corrigées + mappings by Maxime Wack 2017-08-11 09:45:41 -0400
  • d3b9a73 Formatting and style by Maxime Wack 2017-08-09 08:31:44 -0400
  • a575815 Regenerated documentation by Maxime Wack 2017-08-08 11:33:16 -0400
  • 34f4e45 Namespaces by Maxime Wack 2017-08-08 11:33:00 -0400
  • 384ee86 Added doc for additional args in populate_ont by Maxime Wack 2017-08-08 11:32:38 -0400
  • 1a9db52 Cleanup (erased commented out lines, removed deprectated n = Inf in collect) by Maxime Wack 2017-08-08 11:31:39 -0400
  • 6070afa Added dbplyr and tibble to DESCRIPTION file by Maxime Wack 2017-08-08 11:28:55 -0400
  • 2dd1a24 Added biological measures ontology for the hospital by Maxime Wack 2017-08-07 13:32:31 -0400
  • 291f18e Missed defaults in function definition by Maxime Wack 2017-08-07 13:32:08 -0400
  • 418af48 Namespaces corrections, and sanitize all columns in ontologies by Maxime Wack 2017-08-07 13:31:46 -0400
  • 40c20ee Cleaning demodata with tables qt_query* by Maxime Wack 2017-08-07 13:28:33 -0400
  • f6a48d0 Numerical values query FTW by Maxime Wack 2017-07-21 13:55:45 -0400
  • db9899c Corrected populate_ontology and added default values for columns, for the construction of folders by Maxime Wack 2017-07-21 13:35:37 -0400
  • 60f02cc Added codes for vital_status_cd alive and active_status_cd ended by Maxime Wack 2017-07-21 13:34:04 -0400
  • 25e9097 Added %||% helper by Maxime Wack 2017-07-21 13:33:15 -0400
  • f5dae7d Ontologies with special columns and corrections added by Maxime Wack 2017-07-21 13:32:57 -0400
  • de7b9bc Ontologies with customizable columns by Maxime Wack 2017-07-18 14:02:54 -0400
  • 3940d83 No anon version of add_observations using dbUpsert by Maxime Wack 2017-07-13 13:49:28 -0400
  • b961a87 No anon version of add_encounters using dbUpsert by Maxime Wack 2017-07-13 12:36:36 -0400
  • 5bfaef9 Fix for NA values in dbUpsert by Maxime Wack 2017-07-13 12:07:16 -0400