update course/lab 1

4 years ago · e221147b4d
--- a/courses/01-dataviz-intro.Rmd
+++ b/courses/01-dataviz-intro.Rmd
@@ -1,7 +1,7 @@
 ---
 title: "Introduction à la data visualisation"
 author: "Antoine Neuraz"
 date: "18/11/2019"
 date: "16/11/2020"
 output: 
  xaringan::moon_reader:
    css: ['default','css/my_style.css']
@@ -23,13 +23,31 @@ class: center, middle, title
 # UE Visualisation
 ### 2019-2020
 ### 2020-2021
 ## Dr. Antoine Neuraz
 ### AHU Informatique médicale
 #### Hôpital Necker-Enfants malades, </br> Université de Paris
 ---
 class: center, middle
 ![](img/usmap_old.png)
 ---
 class: center, middle
 ![](img/usmap_new.png)
 ---
 class: center, middle
 <video >
 <source src="img/usmap_video.mp4" type="video/mp4">
 </video>
 ---
 class: center, middle
 # 2 Objectifs principaux
@@ -53,7 +71,7 @@ class: center, middle
 ### Mardi après-midi: description du projet
 ### Soutenance le **2 décembre**
 ### Soutenance le **30 novembre**
 ---
@@ -255,8 +273,8 @@ class: center, full
 ---
 # 1 second of internet
 ![](img/1second.png)
 [](https://www.internetlivestats.com/one-second/)
 ![:scale 80%](img/1second.png)
 [https://www.internetlivestats.com/one-second/]()
 ---
 class: center
--- a/courses/01-dataviz-intro.html
+++ b/courses/01-dataviz-intro.html
@@ -1,9 +1,10 @@
 <!DOCTYPE html>
 <html xmlns="http://www.w3.org/1999/xhtml" lang="" xml:lang="">
 <html lang="" xml:lang="">
  <head>
    <title>Introduction à la data visualisation</title>
    <meta charset="utf-8" />
    <meta name="author" content="Antoine Neuraz" />
    <script src="libs/header-attrs-2.5/header-attrs.js"></script>
    <link href="libs/remark-css-0.0.1/default.css" rel="stylesheet" />
    <link rel="stylesheet" href="css/my_style.css" type="text/css" />
  </head>
@@ -17,13 +18,31 @@ class: center, middle, title
 # UE Visualisation
 ### 2019-2020
 ### 2020-2021
 ## Dr. Antoine Neuraz
 ### AHU Informatique médicale
 #### Hôpital Necker-Enfants malades, &lt;/br&gt; Université de Paris
 ---
 class: center, middle
 ![](img/usmap_old.png)
 ---
 class: center, middle
 ![](img/usmap_new.png)
 ---
 class: center, middle
 &lt;video &gt;
 &lt;source src="img/usmap_video.mp4" type="video/mp4"&gt;
 &lt;/video&gt;
 ---
 class: center, middle
 # 2 Objectifs principaux
@@ -47,7 +66,7 @@ class: center, middle
 ### Mardi après-midi: description du projet
 ### Soutenance le **2 décembre**
 ### Soutenance le **30 novembre**
 ---
@@ -249,8 +268,8 @@ class: center, full
 ---
 # 1 second of internet
 ![](img/1second.png)
 [](https://www.internetlivestats.com/one-second/)
 ![:scale 80%](img/1second.png)
 [https://www.internetlivestats.com/one-second/]()
 ---
 class: center
@@ -576,9 +595,25 @@ if (window.HTMLWidgets) slideshow.on('afterShowSlide', function (slide) {
    }
    deleted = true;
  });
 })();</script>
 <script>
 })();
 (function() {
  "use strict"
  // Replace <script> tags in slides area to make them executable
  var scripts = document.querySelectorAll(
    '.remark-slides-area .remark-slide-container script'
  );
  if (!scripts.length) return;
  for (var i = 0; i < scripts.length; i++) {
    var s = document.createElement('script');
    var code = document.createTextNode(scripts[i].textContent);
    s.appendChild(code);
    var scriptAttrs = scripts[i].attributes;
    for (var j = 0; j < scriptAttrs.length; j++) {
      s.setAttribute(scriptAttrs[j].name, scriptAttrs[j].value);
    }
    scripts[i].parentElement.replaceChild(s, scripts[i]);
  }
 })();
 (function() {
  var links = document.getElementsByTagName('a');
  for (var i = 0; i < links.length; i++) {
@@ -586,8 +621,7 @@ if (window.HTMLWidgets) slideshow.on('afterShowSlide', function (slide) {
      links[i].target = '_blank';
    }
  }
 })();
 </script>
 })();</script>
 <script>
 slideshow._releaseMath = function(el) {
--- a/courses/01-dataviz-intro_files/figure-html/unnamed-chunk-2-1.png
+++ b/courses/01-dataviz-intro_files/figure-html/unnamed-chunk-2-1.png
--- a/courses/01-dataviz-intro_files/figure-html/unnamed-chunk-3-1.png
+++ b/courses/01-dataviz-intro_files/figure-html/unnamed-chunk-3-1.png
--- a/courses/01-dataviz-intro_files/figure-html/unnamed-chunk-4-1.png
+++ b/courses/01-dataviz-intro_files/figure-html/unnamed-chunk-4-1.png
--- a/courses/01-dataviz-intro_files/figure-html/unnamed-chunk-5-1.png
+++ b/courses/01-dataviz-intro_files/figure-html/unnamed-chunk-5-1.png
--- a/courses/01-dataviz-intro_files/figure-html/unnamed-chunk-6-1.png
+++ b/courses/01-dataviz-intro_files/figure-html/unnamed-chunk-6-1.png
--- a/courses/img/usmap_new.png
+++ b/courses/img/usmap_new.png
--- a/courses/img/usmap_old.png
+++ b/courses/img/usmap_old.png
--- a/courses/img/usmap_video.mp4
+++ b/courses/img/usmap_video.mp4
--- a/courses/lab01-correction.Rmd
+++ b/courses/lab01-correction.Rmd
@@ -1,7 +1,7 @@
 ---
 title: "correction"
 author: "Antoine Neuraz"
 date: "18/11/2019"
 date: "16/11/2020"
 output: html_document
 ---
--- a/courses/lab01-correction.html
+++ b/courses/lab01-correction.html
--- a/courses/lab01-ggplot-intro.Rmd
+++ b/courses/lab01-ggplot-intro.Rmd
@@ -1,7 +1,7 @@
 ---
 title: "Introduction ggplot2"
 author: "Antoine Neuraz"
 date: "18/11/2019"
 date: "16/11/2020"
 output: 
  xaringan::moon_reader:
    css: ['default','css/my_style.css']
--- a/courses/lab01-ggplot-intro.html
+++ b/courses/lab01-ggplot-intro.html
@@ -1,9 +1,10 @@
 <!DOCTYPE html>
 <html xmlns="http://www.w3.org/1999/xhtml" lang="" xml:lang="">
 <html lang="" xml:lang="">
  <head>
    <title>Introduction ggplot2</title>
    <meta charset="utf-8" />
    <meta name="author" content="Antoine Neuraz" />
    <script src="libs/header-attrs-2.5/header-attrs.js"></script>
    <link href="libs/remark-css-0.0.1/default.css" rel="stylesheet" />
    <link rel="stylesheet" href="css/my_style.css" type="text/css" />
  </head>
@@ -159,6 +160,10 @@ ggplot(iris,
 * geom_smooth(method='lm', se=FALSE)
 ```
 ```
 ## `geom_smooth()` using formula 'y ~ x'
 ```
 ![](lab01-ggplot-intro_files/figure-html/unnamed-chunk-7-1.png)&lt;!-- --&gt;
 ]
@@ -177,6 +182,10 @@ ggplot(iris,
 * facet_grid(~Species)
 ```
 ```
 ## `geom_smooth()` using formula 'y ~ x'
 ```
 ![](lab01-ggplot-intro_files/figure-html/unnamed-chunk-8-1.png)&lt;!-- --&gt;
 ]
 ---
@@ -195,6 +204,10 @@ ggplot(iris,
 * theme_minimal()
 ```
 ```
 ## `geom_smooth()` using formula 'y ~ x'
 ```
 ![](lab01-ggplot-intro_files/figure-html/unnamed-chunk-9-1.png)&lt;!-- --&gt;
 ]
@@ -305,6 +318,8 @@ ggplot(iris,
 ### ajouter les points par dessus la distribution 
 ### paufiner le plot (axes, titres, thème)
    </textarea>
 <style data-target="print-only">@media screen {.remark-slide-container{display:block;}.remark-slide-scaler{box-shadow:none;}}</style>
 <script src="https://remarkjs.com/downloads/remark-latest.min.js"></script>
@@ -354,6 +369,32 @@ if (window.HTMLWidgets) slideshow.on('afterShowSlide', function (slide) {
    deleted = true;
  });
 })();
 (function() {
  "use strict"
  // Replace <script> tags in slides area to make them executable
  var scripts = document.querySelectorAll(
    '.remark-slides-area .remark-slide-container script'
  );
  if (!scripts.length) return;
  for (var i = 0; i < scripts.length; i++) {
    var s = document.createElement('script');
    var code = document.createTextNode(scripts[i].textContent);
    s.appendChild(code);
    var scriptAttrs = scripts[i].attributes;
    for (var j = 0; j < scriptAttrs.length; j++) {
      s.setAttribute(scriptAttrs[j].name, scriptAttrs[j].value);
    }
    scripts[i].parentElement.replaceChild(s, scripts[i]);
  }
 })();
 (function() {
  var links = document.getElementsByTagName('a');
  for (var i = 0; i < links.length; i++) {
    if (/^(https?:)?\/\//.test(links[i].getAttribute('href'))) {
      links[i].target = '_blank';
    }
  }
 })();
 // adds .remark-code-has-line-highlighted class to <pre> parent elements
 // of code chunks containing highlighted lines with class .remark-code-line-highlighted
 (function(d) {
@@ -372,17 +413,6 @@ if (window.HTMLWidgets) slideshow.on('afterShowSlide', function (slide) {
  preParents.forEach(p => p.classList.add("remark-code-has-line-highlighted"));
 })(document);</script>
 <script>
 (function() {
  var links = document.getElementsByTagName('a');
  for (var i = 0; i < links.length; i++) {
    if (/^(https?:)?\/\//.test(links[i].getAttribute('href'))) {
      links[i].target = '_blank';
    }
  }
 })();
 </script>
 <script>
 slideshow._releaseMath = function(el) {
  var i, text, code, codes = el.getElementsByTagName('code');
--- a/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-10-1.png
+++ b/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-10-1.png
--- a/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-11-1.png
+++ b/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-11-1.png
--- a/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-12-1.png
+++ b/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-12-1.png
--- a/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-2-1.png
+++ b/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-2-1.png
--- a/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-3-1.png
+++ b/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-3-1.png
--- a/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-4-1.png
+++ b/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-4-1.png
--- a/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-5-1.png
+++ b/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-5-1.png
--- a/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-6-1.png
+++ b/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-6-1.png
--- a/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-7-1.png
+++ b/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-7-1.png
--- a/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-8-1.png
+++ b/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-8-1.png
--- a/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-9-1.png
+++ b/courses/lab01-ggplot-intro_files/figure-html/unnamed-chunk-9-1.png
--- a/courses/libs/header-attrs-2.5/header-attrs.js
+++ b/courses/libs/header-attrs-2.5/header-attrs.js
@@ -0,0 +1,12 @@
 // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
 // be compatible with the behavior of Pandoc < 2.8).
 document.addEventListener('DOMContentLoaded', function(e) {
  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
  var i, h, a;
  for (i = 0; i < hs.length; i++) {
    h = hs[i];
    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
    a = h.attributes;
    while (a.length > 0) h.removeAttribute(a[0].name);
  }
 });
--- a/courses/libs/remark-css-0.0.1/default.css
+++ b/courses/libs/remark-css-0.0.1/default.css
@@ -41,7 +41,7 @@ a, a > code {
  float: right;
  width: 47%;
 }
 .pull-right ~ * {
 .pull-right + * {
  clear: both;
 }
 img, video, iframe {