 Maxime Wack
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d320558462
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Automatically get ontology name from scheme when populating
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6 years ago |
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Maxime Wack
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2d7a33feb8
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Updated doc
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6 years ago |
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Maxime Wack
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f68307ac37
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Still allow for a remote domain call for i2b2 xml messages
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6 years ago |
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Maxime Wack
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9005f698fd
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Set created project (A)ctive
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6 years ago |
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Maxime Wack
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672b58df0f
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Updated documentation
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6 years ago |
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Maxime Wack
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59a23b3584
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Get the domain id locally for i2b2_msg
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6 years ago |
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Maxime Wack
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04f001537e
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Erase secure_db
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6 years ago |
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Maxime Wack
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4c6329e8e3
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database name in lowercase
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6 years ago |
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Maxime Wack
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3fa4ea617e
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Deleted ontology.R as functions became less useful
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6 years ago |
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Maxime Wack
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098b6479b2
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Correct formatting for the output crc-ds.xml file
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6 years ago |
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Maxime Wack
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d650ded08d
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Corrected xml for crc-ds
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6 years ago |
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Maxime Wack
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1c9659ef6c
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Fix in default workspace_access line
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6 years ago |
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Maxime Wack
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9db4d57b33
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Vacuum tables when clearing them
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6 years ago |
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Maxime Wack
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5fd68a97f0
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Drop correct database when deleting project
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6 years ago |
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Maxime Wack
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2aa5f32dee
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Fix in clear_default_demodata
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6 years ago |
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Maxime Wack
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9423444284
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Corrected automatic correction for pg -> postgresql-9.1 in system
service function
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6 years ago |
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Maxime Wack
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50db8f1b69
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Updated doc + checks
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6 years ago |
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Maxime Wack
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3805061fdd
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Hide function secure_db as it conflicts with multiple projects
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6 years ago |
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Maxime Wack
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c8009a986d
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Specify project in demodata functions
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6 years ago |
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Maxime Wack
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28192b1253
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Added function to manage services
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6 years ago |
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Maxime Wack
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979924595f
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Added modification of crc-ds.xml for new crc databases
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6 years ago |
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Maxime Wack
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a593c4f1ec
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Hide secure database as it is not useful if postgresql is correctly
configured, and will interact with creation of new projects
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6 years ago |
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Maxime Wack
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53908afce3
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Removal of trailing spaces
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6 years ago |
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Maxime Wack
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086f428a7d
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Doc for list_concepts
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6 years ago |
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Maxime Wack
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88cb073eef
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Added documentation
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6 years ago |
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Maxime Wack
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8c6cdf6a35
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Added get_domain. Changed set_project with add_project and added
delete_project and list_projects
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6 years ago |
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Maxime Wack
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5be28f471d
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host/admin/pass args at the end of function calls
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6 years ago |
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Maxime Wack
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7675fb6dbe
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Added workplace scripts
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6 years ago |
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Maxime Wack
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e97a849711
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Udpated populate_concept with new format for ontology and modifiers
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6 years ago |
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Maxime Wack
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9f6c3d0818
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Added documentation for list_concepts
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6 years ago |
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Maxime Wack
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2516197b71
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Onto bio corrigées + mappings
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6 years ago |
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Maxime Wack
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d3b9a73391
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Formatting and style
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6 years ago |
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Maxime Wack
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a575815f61
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Regenerated documentation
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6 years ago |
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Maxime Wack
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34f4e452c2
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Namespaces
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6 years ago |
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Maxime Wack
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384ee866c2
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Added doc for additional args in populate_ont
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6 years ago |
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Maxime Wack
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1a9db52439
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Cleanup (erased commented out lines, removed deprectated n = Inf in
collect)
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6 years ago |
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Maxime Wack
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6070afa96a
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Added dbplyr and tibble to DESCRIPTION file
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6 years ago |
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Maxime Wack
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2dd1a246c3
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Added biological measures ontology for the hospital
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6 years ago |
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Maxime Wack
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291f18ec12
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Missed defaults in function definition
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6 years ago |
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Maxime Wack
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418af48d8a
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Namespaces corrections, and sanitize all columns in ontologies
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6 years ago |
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Maxime Wack
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40c20ee14d
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Cleaning demodata with tables qt_query*
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6 years ago |
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Maxime Wack
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f6a48d0bf6
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Numerical values query FTW
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6 years ago |
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Maxime Wack
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db9899cffd
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Corrected populate_ontology and added default values for columns, for the construction of folders
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6 years ago |
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Maxime Wack
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60f02cc696
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Added codes for vital_status_cd alive and active_status_cd ended
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6 years ago |
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Maxime Wack
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25e90973fe
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Added %||% helper
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6 years ago |
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Maxime Wack
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f5dae7d4b1
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Ontologies with special columns and corrections added
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6 years ago |
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Maxime Wack
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de7b9bc7b5
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Ontologies with customizable columns
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6 years ago |
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Maxime Wack
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3940d8381d
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No anon version of add_observations using dbUpsert
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6 years ago |
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Maxime Wack
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b961a87c22
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No anon version of add_encounters using dbUpsert
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6 years ago |
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Maxime Wack
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5bfaef9a6b
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Fix for NA values in dbUpsert
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6 years ago |
