 Maxime Wack
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b45503c18f
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No anon version of add_patients_demodata, using dbUpsert
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6 years ago |
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Maxime Wack
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4af342ab2e
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Updated documentation
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6 years ago |
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Maxime Wack
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1258adad71
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Added dbUpsert function
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6 years ago |
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Maxime Wack
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6792f0c074
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Moved `options(scipen = 999)` to dbPush/Update
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6 years ago |
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Maxime Wack
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fc189d3caa
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Added list_modifiers and list_concepts functions
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6 years ago |
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Maxime Wack
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6e872cad80
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Added list_ functions for ontologies and schemes, and to fetch an
ontology
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6 years ago |
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Maxime Wack
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025a659368
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Added list_ functions for users and user roles
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6 years ago |
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Maxime Wack
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efc25fed74
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Replaced purrr::dmap with purrr::map + data.frame(check.names = F,
stringsAsFactors = F)
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7 years ago |
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Maxime Wack
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654789631b
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Connection credentials arguments at the end, with defaults for local
connection
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7 years ago |
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Maxime Wack
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e2a83d4fca
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Doc update
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7 years ago |
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Maxime Wack
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9582d1846c
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Corrected hospital structure for duplicate elements
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7 years ago |
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Maxime Wack
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086d37f44a
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Modified argument order in dbUpdate for easier use
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7 years ago |
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Maxime Wack
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7d0cc7d753
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Changed order of arguments in dbPush to make it more usable
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7 years ago |
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Maxime Wack
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d0d76daca0
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Updated documentation
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7 years ago |
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Maxime Wack
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1d8387abde
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Removed default host, useless and cluttering
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7 years ago |
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Maxime Wack
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6dcdca6b8c
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Replaced individual functions with the generic `clear_table`
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7 years ago |
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Maxime Wack
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f6e1d6989f
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Added function to clear a database table
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7 years ago |
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Maxime Wack
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4e9284fe84
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Corrected mutate possibly on empty df
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7 years ago |
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Maxime Wack
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59d5045c61
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Added documentation
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7 years ago |
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Maxime Wack
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9ba18f2bd7
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Added a function to load patients, encounters and observations at the
same time
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7 years ago |
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Maxime Wack
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ec770c7501
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Updated documentation
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7 years ago |
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Maxime Wack
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8d223f6d78
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devtools::check corrections
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7 years ago |
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Maxime Wack
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b3456b4c99
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Type correction for joins
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7 years ago |
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Maxime Wack
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c099b00783
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Replaced non-working `try` statements
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7 years ago |
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Maxime Wack
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ad1056c457
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Deleted description for ontology/schemes
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7 years ago |
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Maxime Wack
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c7246228c6
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Added rebuild_indexes_demodata
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7 years ago |
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Maxime Wack
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9214f4e03e
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Changed default onto container to folder, for easier querying
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7 years ago |
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Maxime Wack
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b365aeb34c
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Updated structure
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7 years ago |
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Maxime Wack
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351320ba33
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options(scipen = 999) to ensure proper conversion of IDs to chars
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7 years ago |
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Maxime Wack
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e23c992f5e
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Prevent errors when no pre-existing or no new patients added
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7 years ago |
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Maxime Wack
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dac0f9ba69
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{start,end}date -> {}_date
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7 years ago |
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Maxime Wack
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946c829c3a
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Skeleton for add_observations
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7 years ago |
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Maxime Wack
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7a3887ebfe
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Ensure patient and encounter mappings are characters
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7 years ago |
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Maxime Wack
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be9ac76ebd
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Updated documentation
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7 years ago |
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Maxime Wack
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f34337a5d5
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Comment fixes
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7 years ago |
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Maxime Wack
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1ce90ef9fd
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Updated documentation
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7 years ago |
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Maxime Wack
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48367326cc
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Added comments and roxygen doc
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7 years ago |
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Maxime Wack
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d3547c41e0
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Fix dplyr:: calls
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7 years ago |
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Maxime Wack
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481cf08f9e
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Return the encounter_mapping
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7 years ago |
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Maxime Wack
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31f22d9533
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Push and update visit_dimension
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7 years ago |
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Maxime Wack
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eef6cc4b35
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Fixed pushing the new encounter mappings + added HIVE encounter mappings
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7 years ago |
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Maxime Wack
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c065549da8
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Fixed creating new encounter mappings
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7 years ago |
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Maxime Wack
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6cf097c487
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Fixed join in updating patient_dimension
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7 years ago |
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Maxime Wack
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7eeb5459f8
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Added return of patient mappings to add_patients. Updated doc + comments
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7 years ago |
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Maxime Wack
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c165a06142
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Protect some database calls
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7 years ago |
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Maxime Wack
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7d2191eaa8
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Update existing patients in patient_dimension when inserting new
patients
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7 years ago |
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Maxime Wack
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348926c341
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Added documentation for dbUpdate
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7 years ago |
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Maxime Wack
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11e07cbf65
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Added function dbUpdate to update values in a database table
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7 years ago |
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Maxime Wack
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f47a016669
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Corrected last bug with include_code
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7 years ago |
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Maxime Wack
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d2457ed94e
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Corrected structure ontology file
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7 years ago |
