 Maxime Wack
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7809de246e
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Default credentials to locally connect to db
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6 years ago |
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Maxime Wack
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db26a9ecc6
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Restarted README
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6 years ago |
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Maxime Wack
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e09c8d80e8
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Added an initialization script
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6 years ago |
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Maxime Wack
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2d43d97ea6
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Removed specific code
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6 years ago |
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Maxime Wack
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bb7186a33a
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Removed specific files
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6 years ago |
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Maxime Wack
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644da9f8a1
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Correct column defaults for populate_ont for structure
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6 years ago |
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Maxime Wack
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ec1efc5d70
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Do not create a schema for a new crc database
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6 years ago |
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Maxime Wack
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1c7f8d5480
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Function to create users and managers for projects and top_project
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6 years ago |
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Maxime Wack
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9bab8c3018
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Function to load data on projects and a top_project
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6 years ago |
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Maxime Wack
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803f03b0ee
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Function to load data in the main project
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6 years ago |
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Maxime Wack
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b736b61d03
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Modifier_cd in read_mensurations
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6 years ago |
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Maxime Wack
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596c89c2e7
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Formatting
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6 years ago |
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Maxime Wack
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c3b8a19b37
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Fix read_bios with optional arguments and modifier_cd
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6 years ago |
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Maxime Wack
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8da32fe4e7
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vectorize sanitize_* functions
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6 years ago |
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Maxime Wack
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b5b726ddbb
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Formatting
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6 years ago |
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Maxime Wack
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9f3102a07f
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n() in mutate doesn't need the namespace
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6 years ago |
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Maxime Wack
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90c42b31f0
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Correct joins and select for dxcare data
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6 years ago |
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Maxime Wack
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35e3cdef5c
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Restart pgsql before deleting a project, restart jboss after
adding/deleting a project
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6 years ago |
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Maxime Wack
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0acd2d4e02
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scipen for dbUpsert
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6 years ago |
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Maxime Wack
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96924cebc4
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Cleaning typos and leftovers from cc
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6 years ago |
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Maxime Wack
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ad4995a127
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Delete user roles when deleting a project
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6 years ago |
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Maxime Wack
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11fc32d2cb
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Sanitize_patient not encounter
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6 years ago |
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Maxime Wack
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3395b1d479
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Use database names from the beginning (inout_cd)
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6 years ago |
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Maxime Wack
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6bfa44af4c
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Checks and documentation updates
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6 years ago |
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Maxime Wack
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c772b7c659
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Moved some common patterns to functions
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6 years ago |
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Maxime Wack
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3962c7add4
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Count the instance_num when pushing observations
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6 years ago |
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Maxime Wack
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81df0dfc10
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Fix for crc-ds.xml ? (previous version overwrote the whole file ?)
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6 years ago |
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Maxime Wack
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f745c107bf
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Added a bunch of projects and users and data
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6 years ago |
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Maxime Wack
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7843bbb651
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Correct for empty dataframes
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6 years ago |
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Maxime Wack
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2f098d1dd2
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Correct for empty dataframes, + correct date format
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6 years ago |
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Maxime Wack
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297d42483d
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Typo in filename
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6 years ago |
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Maxime Wack
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e18b9d2c0d
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Discard null values
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6 years ago |
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Maxime Wack
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7046f3dc78
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Corrected for multiple instances
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6 years ago |
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Maxime Wack
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b0dcdefa0f
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Added body measurments to onto
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6 years ago |
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Maxime Wack
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9f78bc33fb
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Populate main hospital db
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6 years ago |
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Maxime Wack
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1b89348697
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Don't insert HIVE mappings ?
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6 years ago |
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Maxime Wack
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c95b202053
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Correct for collisions
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6 years ago |
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Maxime Wack
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c115fac70f
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Add AGG_SERVICE_ACCOUNT to a new project
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6 years ago |
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Maxime Wack
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587fee4f53
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Updated doc
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6 years ago |
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Maxime Wack
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ff1adbfbb9
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Import data functions
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6 years ago |
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Maxime Wack
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f672631c1b
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Current fresh_install
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6 years ago |
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Maxime Wack
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3faba28dae
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Use a mapping for encounters
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6 years ago |
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Maxime Wack
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bfc12f151f
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use sex_cd, no need to complicate variable naming
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6 years ago |
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Maxime Wack
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b729dd84d6
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Corrected for duplicate values and incorrect codes + missing mapping
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6 years ago |
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Maxime Wack
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1537e4c93c
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Correctly formatted ontology files
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6 years ago |
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Maxime Wack
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3eee2a8504
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Fix in formula call
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6 years ago |
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Maxime Wack
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9cc9cec3d0
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Correction for rebuild indexes to do it on the current crc database for
the project
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6 years ago |
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Maxime Wack
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204d312b01
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Namespace and documentation fixes
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6 years ago |
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Maxime Wack
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aac83bb66d
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Updated doc
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6 years ago |
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Maxime Wack
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6aad195e23
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Also get ont name from scheme when inserting concepts/providers, and use
new ont format
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6 years ago |
