158 Commits (master)
 

Author SHA1 Message Date
  Maxime Wack 323b6be7d2 Change branch naming convention !! 3 months ago
  Maxime Wack e5b80e0dd8 Update README 3 months ago
  Maxime Wack 20c3ea5b51 Update README with more details about requirements 3 months ago
  Maxime Wack eb00eb0dc0 Fix timeline. 3 months ago
  Maxime Wack e7560ce94c Set option in git annex config so that it propagates to other clones 3 months ago
  Maxime Wack 8a105062dc Fix hashes parsing 3 months ago
  Maxime Wack f90ebb92e7 Get invalidated from all samples. Indicate wasInvalidatedBy 3 months ago
  Maxime Wack 9a5f1c5d92 Update figures 3 months ago
  Maxime Wack 6479829b71 Fix tests 3 months ago
  Maxime Wack d83b310735 Portable makefile with creating directories 3 months ago
  Maxime Wack e2e7cead82 Correct diagnostic to diagnosis 3 months ago
  Maxime Wack 2d3605dcd6 Update gitignore 3 months ago
  Maxime Wack 9612b2c794 Fix completing object names with colons. Integrate with bash-completions 3 months ago
  Maxime Wack 240989515e Group related dot-munging operations 3 months ago
  Maxime Wack 55d8cc6dd4 Add HPV test 3 months ago
  Maxime Wack 08e3ee41b2 Prettier graphical output 3 months ago
  Maxime Wack ab3fce7269 Add bash completions 3 months ago
  Maxime Wack 794867d0b3 Fix list_patient to silence errors 3 months ago
  Maxime Wack f4269d48e5 Add get all to list all objects 3 months ago
  Maxime Wack 9b9d491875 Document Add and List operations in README 3 months ago
  Maxime Wack 58a6bf7c2c Add GPL3 licence 3 months ago
  Maxime Wack 3d11f77598 Add documentation and help 3 months ago
  Maxime Wack a1f03c1d0b Update and add tests 3 months ago
  Maxime Wack c3a81da517 Add modifications in dot to display agents and activities 3 months ago
  Maxime Wack 8a698bdf88 Provide a SPARQL endpoint 3 months ago
  Maxime Wack 4f1945690d Enable overriding configuration using environment variables 3 months ago
  Maxime Wack 4c61a40106 Make PROVDIER optional and qualify all entities 3 months ago
  Maxime Wack 19e451642c Running rapper to clean up PROV message doesn't need pre-sorting 3 months ago
  Maxime Wack d15ceba4a3 Prettier output 3 months ago
  Maxime Wack 39917b91b3 Comments 3 months ago
  Maxime Wack acbac8e09e Rewrite validate_sample 3 months ago
  Maxime Wack c4943bdbee Reorganise functions file 3 months ago
  Maxime Wack 57ab0beddd List directory contents idiomatically 3 months ago
  Maxime Wack 6b2fd4edc2 Prettier debug log 3 months ago
  Maxime Wack 50b9e434a7 Accept extra arguments from STDIN 3 months ago
  Maxime Wack a06b30d8de Simpler dispatch for get functions 3 months ago
  Maxime Wack 6419f60567 Abstract turtle2prov to use in get graph and get timeline 3 months ago
  Maxime Wack 8281141ab4 List the files added by an object 3 months ago
  Maxime Wack b244278389 Get the git log 3 months ago
  Maxime Wack 259517bef1 Fix get object to target the correct argument 3 months ago
  Maxime Wack 3531edb791 Generic list object function 3 months ago
  Maxime Wack 7a11ad30b6 Validate patients as git repositories 3 months ago
  Maxime Wack 54ff4f63a7 Move completion script out of the main functions file 3 months ago
  Maxime Wack 25a30a7a86 Checkout any commit with get_object 3 months ago
  Maxime Wack 513b8dc8aa Run the PROV turtle text through rapper to clean it 3 months ago
  Maxime Wack 039c54873e Do not qualify a patient by default 3 months ago
  Maxime Wack 055495c7ae Exit if trying to add a sample that already exists 3 months ago
  Maxime Wack 74d416b324 Add get_timeline to generate a diagnostic timeline graphical representation 3 months ago
  Maxime Wack 95d74cdb62 Add get_graph to generate a graphical representation of the prov graph 3 months ago
  Maxime Wack 4d006d6e55 Rewrite get_last 3 months ago